peakfinder matlab script Search Results


peakfinder matlab script  (MathWorks Inc)
90
MathWorks Inc peakfinder matlab script
Peakfinder Matlab Script, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/peakfinder matlab script/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
peakfinder matlab script - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
peakfinder  (MathWorks Inc)
90
MathWorks Inc peakfinder
Illustration of smoothing using the convex envelope and shows the actual graphics provided by PeakCaller . In the upper graph, for the original Ca 2+ recording (in black), the smoothing using a convex envelope is given by the dotted red curve. The lower graph shows the de-trended data series, which is simply the quotient of the original data divided by the smoothed data. Note in this case that the de-trended data “bounces off” of a minimum value of one exactly at the corners where the convex envelope touches the original profile. Peaks identified by PeakCaller are marked with a green circle, whereas peaks identified by <t>PeakFinder</t> are marked with a red ‘X’
Peakfinder, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/peakfinder/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
peakfinder - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
peakfinding script in  (MathWorks Inc)
90
MathWorks Inc peakfinding script in
Illustration of smoothing using the convex envelope and shows the actual graphics provided by PeakCaller . In the upper graph, for the original Ca 2+ recording (in black), the smoothing using a convex envelope is given by the dotted red curve. The lower graph shows the de-trended data series, which is simply the quotient of the original data divided by the smoothed data. Note in this case that the de-trended data “bounces off” of a minimum value of one exactly at the corners where the convex envelope touches the original profile. Peaks identified by PeakCaller are marked with a green circle, whereas peaks identified by <t>PeakFinder</t> are marked with a red ‘X’
Peakfinding Script In, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/peakfinding script in/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
peakfinding script in - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
peakfinder script version 2.0.2.0  (MathWorks Inc)
90
MathWorks Inc peakfinder script version 2.0.2.0
Illustration of smoothing using the convex envelope and shows the actual graphics provided by PeakCaller . In the upper graph, for the original Ca 2+ recording (in black), the smoothing using a convex envelope is given by the dotted red curve. The lower graph shows the de-trended data series, which is simply the quotient of the original data divided by the smoothed data. Note in this case that the de-trended data “bounces off” of a minimum value of one exactly at the corners where the convex envelope touches the original profile. Peaks identified by PeakCaller are marked with a green circle, whereas peaks identified by <t>PeakFinder</t> are marked with a red ‘X’
Peakfinder Script Version 2.0.2.0, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/peakfinder script version 2.0.2.0/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
peakfinder script version 2.0.2.0 - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
peakfinder script  (MathWorks Inc)
90
MathWorks Inc peakfinder script
Illustration of smoothing using the convex envelope and shows the actual graphics provided by PeakCaller . In the upper graph, for the original Ca 2+ recording (in black), the smoothing using a convex envelope is given by the dotted red curve. The lower graph shows the de-trended data series, which is simply the quotient of the original data divided by the smoothed data. Note in this case that the de-trended data “bounces off” of a minimum value of one exactly at the corners where the convex envelope touches the original profile. Peaks identified by PeakCaller are marked with a green circle, whereas peaks identified by <t>PeakFinder</t> are marked with a red ‘X’
Peakfinder Script, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/peakfinder script/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
peakfinder script - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
nis elements advanced research version 4.13  (Nikon)
90
Nikon nis elements advanced research version 4.13
Illustration of smoothing using the convex envelope and shows the actual graphics provided by PeakCaller . In the upper graph, for the original Ca 2+ recording (in black), the smoothing using a convex envelope is given by the dotted red curve. The lower graph shows the de-trended data series, which is simply the quotient of the original data divided by the smoothed data. Note in this case that the de-trended data “bounces off” of a minimum value of one exactly at the corners where the convex envelope touches the original profile. Peaks identified by PeakCaller are marked with a green circle, whereas peaks identified by <t>PeakFinder</t> are marked with a red ‘X’
Nis Elements Advanced Research Version 4.13, supplied by Nikon, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/nis elements advanced research version 4.13/product/Nikon
Average 90 stars, based on 1 article reviews
nis elements advanced research version 4.13 - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
script for matlab peakfinder  (MathWorks Inc)
90
MathWorks Inc script for matlab peakfinder
Illustration of smoothing using the convex envelope and shows the actual graphics provided by PeakCaller . In the upper graph, for the original Ca 2+ recording (in black), the smoothing using a convex envelope is given by the dotted red curve. The lower graph shows the de-trended data series, which is simply the quotient of the original data divided by the smoothed data. Note in this case that the de-trended data “bounces off” of a minimum value of one exactly at the corners where the convex envelope touches the original profile. Peaks identified by PeakCaller are marked with a green circle, whereas peaks identified by <t>PeakFinder</t> are marked with a red ‘X’
Script For Matlab Peakfinder, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/script for matlab peakfinder/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
script for matlab peakfinder - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier

Image Search Results


Illustration of smoothing using the convex envelope and shows the actual graphics provided by PeakCaller . In the upper graph, for the original Ca 2+ recording (in black), the smoothing using a convex envelope is given by the dotted red curve. The lower graph shows the de-trended data series, which is simply the quotient of the original data divided by the smoothed data. Note in this case that the de-trended data “bounces off” of a minimum value of one exactly at the corners where the convex envelope touches the original profile. Peaks identified by PeakCaller are marked with a green circle, whereas peaks identified by PeakFinder are marked with a red ‘X’

Journal: BMC Neuroscience

Article Title: PeakCaller: an automated graphical interface for the quantification of intracellular calcium obtained by high-content screening

doi: 10.1186/s12868-017-0391-y

Figure Lengend Snippet: Illustration of smoothing using the convex envelope and shows the actual graphics provided by PeakCaller . In the upper graph, for the original Ca 2+ recording (in black), the smoothing using a convex envelope is given by the dotted red curve. The lower graph shows the de-trended data series, which is simply the quotient of the original data divided by the smoothed data. Note in this case that the de-trended data “bounces off” of a minimum value of one exactly at the corners where the convex envelope touches the original profile. Peaks identified by PeakCaller are marked with a green circle, whereas peaks identified by PeakFinder are marked with a red ‘X’

Article Snippet: PeakFinder is a MATLAB script which automates the identification of “peaks” of independent variables over time, and is commonly used in the quantification of Ca 2+ signaling.

Techniques:

Analysis of Zeiss Spinning Disk and ThermoFisher Array Scan Ca 2+ imaging data output by PeakCaller . The vertical axis represents Fluo-4 fluorescence emission intensity (arbitrary units) and the horizontal axis is time in seconds. Green circles represent PeakCaller identified peaks. Red Xs represent PeakFinder identified peaks. Parameters were chosen to best represent data generated on both platforms

Journal: BMC Neuroscience

Article Title: PeakCaller: an automated graphical interface for the quantification of intracellular calcium obtained by high-content screening

doi: 10.1186/s12868-017-0391-y

Figure Lengend Snippet: Analysis of Zeiss Spinning Disk and ThermoFisher Array Scan Ca 2+ imaging data output by PeakCaller . The vertical axis represents Fluo-4 fluorescence emission intensity (arbitrary units) and the horizontal axis is time in seconds. Green circles represent PeakCaller identified peaks. Red Xs represent PeakFinder identified peaks. Parameters were chosen to best represent data generated on both platforms

Article Snippet: PeakFinder is a MATLAB script which automates the identification of “peaks” of independent variables over time, and is commonly used in the quantification of Ca 2+ signaling.

Techniques: Imaging, Fluorescence, Generated

PeakCaller decreases the incidence of type I errors in cultured hiPSC-derived cortical neurons (* p < 0.05). a No difference in incidence of type II errors was found between PeakCaller and PeakFinder under these culture conditions. b Representative trace shows over estimation of peak incidence and frequency in PeakFinder (red X) script. c Designated ROI for the recording in this representative trace

Journal: BMC Neuroscience

Article Title: PeakCaller: an automated graphical interface for the quantification of intracellular calcium obtained by high-content screening

doi: 10.1186/s12868-017-0391-y

Figure Lengend Snippet: PeakCaller decreases the incidence of type I errors in cultured hiPSC-derived cortical neurons (* p < 0.05). a No difference in incidence of type II errors was found between PeakCaller and PeakFinder under these culture conditions. b Representative trace shows over estimation of peak incidence and frequency in PeakFinder (red X) script. c Designated ROI for the recording in this representative trace

Article Snippet: PeakFinder is a MATLAB script which automates the identification of “peaks” of independent variables over time, and is commonly used in the quantification of Ca 2+ signaling.

Techniques: Cell Culture, Derivative Assay

a Reduction of type I errors by PeakCaller after application of PTX to induce excitation. Prior to PTX exposure both PeakFinder and PeakCaller correctly identified the same number of peaks per active cell. After PTX exposure (50 μM), PeakCaller correctly modeled the state of induced excitation and excitotoxicity in the hiPSC derived cortical neurons, while PeakFinder initially under estimated the number of peaks and then over estimated the number or Ca 2+ peaks. b Representative traces of ROI 4 are provided to show the transient increase in Ca 2+ signaling after application of PTX. c Designated ROIs across all recordings for this representative experiment

Journal: BMC Neuroscience

Article Title: PeakCaller: an automated graphical interface for the quantification of intracellular calcium obtained by high-content screening

doi: 10.1186/s12868-017-0391-y

Figure Lengend Snippet: a Reduction of type I errors by PeakCaller after application of PTX to induce excitation. Prior to PTX exposure both PeakFinder and PeakCaller correctly identified the same number of peaks per active cell. After PTX exposure (50 μM), PeakCaller correctly modeled the state of induced excitation and excitotoxicity in the hiPSC derived cortical neurons, while PeakFinder initially under estimated the number of peaks and then over estimated the number or Ca 2+ peaks. b Representative traces of ROI 4 are provided to show the transient increase in Ca 2+ signaling after application of PTX. c Designated ROIs across all recordings for this representative experiment

Article Snippet: PeakFinder is a MATLAB script which automates the identification of “peaks” of independent variables over time, and is commonly used in the quantification of Ca 2+ signaling.

Techniques: Derivative Assay

a Reduction of type II error in dissociated mouse cortical neurons. PeakCaller demonstrated the ability to reduce the occurrence of type II errors ( p < 0.05) in three of four Ca 2+ recordings. No difference in incidence of type II error was found between the two scripts for the fourth recording. PeakCaller also showed a significant ( p < 0.05) reduction in type I error in recording A. b Representative traces below show PeakCaller peaks in green circles and PeakFinder peaks as red Xs. c Designated ROIs for this representative experiment

Journal: BMC Neuroscience

Article Title: PeakCaller: an automated graphical interface for the quantification of intracellular calcium obtained by high-content screening

doi: 10.1186/s12868-017-0391-y

Figure Lengend Snippet: a Reduction of type II error in dissociated mouse cortical neurons. PeakCaller demonstrated the ability to reduce the occurrence of type II errors ( p < 0.05) in three of four Ca 2+ recordings. No difference in incidence of type II error was found between the two scripts for the fourth recording. PeakCaller also showed a significant ( p < 0.05) reduction in type I error in recording A. b Representative traces below show PeakCaller peaks in green circles and PeakFinder peaks as red Xs. c Designated ROIs for this representative experiment

Article Snippet: PeakFinder is a MATLAB script which automates the identification of “peaks” of independent variables over time, and is commonly used in the quantification of Ca 2+ signaling.

Techniques: